PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G152400.1
Common NamePHAVU_006G152400g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NF-YC
Protein Properties Length: 230aa    MW: 25240.1 Da    PI: 4.38
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G152400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC139.49.6e-44561572100
               NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 
                         ++sfw++q   ie++td+k h+lPlari+ki+k+dedvkm+s+ea +ll+kacelfi+elt+r+w + e+ krr ++k+di++a++ +d+f
  Phvul.006G152400.1  56 VNSFWARQlkeIEESTDLKSHSLPLARIRKIMKFDEDVKMVSTEATMLLAKACELFIMELTMRAWANVEDDKRRIIQKTDISSAISMSDVF 146
                         578***998889******************************************************************************* PP

               NF-YC  90 dflvdivprde 100
                         dflvd+vprd+
  Phvul.006G152400.1 147 DFLVDTVPRDD 157
                         *********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.85E-2833149IPR009072Histone-fold
PfamPF008085.6E-1977140IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.3E-3178155IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MDQNQHGEAG GKGPAPAEEE APNTNPPTQT VGVTGGNRYD RQCMQQQQQE KMQQRVNSFW  60
ARQLKEIEES TDLKSHSLPL ARIRKIMKFD EDVKMVSTEA TMLLAKACEL FIMELTMRAW  120
ANVEDDKRRI IQKTDISSAI SMSDVFDFLV DTVPRDDTVT VGPQLLAGIA PTPNQNAPYP  180
YMSIPDQHVA GPPPPYAAPT NAPEDAANPS CSNSDPTPNE QDTSSSDDH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C3e-345615519119HapE
4g92_C3e-345615519119HapE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007147756.11e-172hypothetical protein PHAVU_006G152400g
SwissprotQ8LCG72e-48NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLV7BRS71e-172V7BRS7_PHAVU; Uncharacterized protein
STRINGGLYMA08G15700.11e-58(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2069625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-43nuclear factor Y, subunit C2